ydeP [2019-09-03 10:22:42]

[SW|MarR family|MarR/DUF24 family] transcription regulator

locus: BSU_05290

pI: 9.40

mw: 15.07 kDa

protein length: 128 aa

gene length: 387 bp

function: unknown

product: [SW|MarR family|MarR/DUF24 family] transcription regulator

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 575,712 576,098

The protein

Protein family

• [SW|MarR family|MarR/DUF24 family]

Paralogous protein(s)

• [protein|73AFDF65BE89C0E2CC59AF2AF64C29BD99D785DF|YodB], [protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|HypR], [protein|C57DDC9710CB557179B062F9C5D786DB02A3B5FC|YkvN], [protein|D9A187961CFB9496A6712E9E48AAD384357A3E1C|HxlR], [protein|E757C4B329A99E3D0C70C77437DF4DDA300CA5E7|YdzF], [protein|1E74F0557FF9ECB404B6544831F4E0A162473423|YtcD]

Structure

• [PDB|4A5M] ([protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|HypR], 71% identity) [pubmed|22238377]

Expression and Regulation

Operons

• genes: [gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C167 (ydeP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2165 NBRP B. subtilis, Japan]
• BKE05290 ([gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA, downstream forward: _UP4_TAATAACCAGAAAAAATACC
• BKK05290 ([gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA, downstream forward: _UP4_TAATAACCAGAAAAAATACC

References

Research papers

• 22238377